PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00115782001
Common NameGSBRNA2T00115782001, LOC106436626
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 258aa    MW: 28820.1 Da    PI: 8.4146
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00115782001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.56.7e-1573125155
                          CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                          ++++h ++Er+RR ++ s f  Lr+llP       ++K s a+ + +Av+YIk+Lq
  GSBRNA2T00115782001  73 KKMKHRAIERQRRFEVSSLFKSLRSLLPLqY---IQGKRSTADHVSQAVNYIKDLQ 125
                          6899*************************66...*********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.95E-1470129No hitNo description
SuperFamilySSF474598.9E-1771147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.09772124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-1273125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-1373141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.2E-678130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MDFETSMFMP DLTDEDGLLF SDSFLLSPLI AYQNHDVCNQ ITDKNGASNK KRSLCDTYVA  60
SEANNGDDDR ESKKMKHRAI ERQRRFEVSS LFKSLRSLLP LQYIQGKRST ADHVSQAVNY  120
IKDLQNKIKK LNEKKDRLKK SLPSTLTAHP TTEECTSSLS SSLSTSSSRC SCVGDKHITV  180
MVMPCFVGIE IIISCCLERN KSCLSIALQI LAQEERLSVV SCLSTRLQQR FVHTIVSQVG  240
SGIKINISEL KDKIVSM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00115782001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013733038.10.0PREDICTED: transcription factor bHLH125-like
SwissprotQ9LQ081e-123BH125_ARATH; Transcription factor bHLH125
TrEMBLA0A078ERC20.0A0A078ERC2_BRANA; BnaC09g10990D protein
STRINGBra036640.1-P1e-160(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62281843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62975.11e-100bHLH family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]